The COG database: an
updated version includes eukaryotes
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin
EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS,
Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA
BMC
Bioinformatics. 2003 Sep 11;4(1):41. |
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Phylogeny
collection
A fantastic collection of articles from the Evolutionary Biology
Group at the University of Oxford |
- Hepatitis C virus
To get a listing of interesting articles, copy the query below,
then paste it in the text box at PubMed
"journal of clinical microbiology"[Journal] AND HCV[Title/Abstract]
AND phylogenetic[Title/Abstract]
- Outbreak of Nosocomial Hepatitis C Virus Infection Resolved
by Genetic Analysis of HCV RNA.
Bruguera,M., Saiz,J.C., Franco,S., Gimenez-Barcons,M., Sanchez-Tapias,J.M.,
Fabregas,S., Vega,R., Camps,N., Dominguez,A., Salleras,L.
J.
Clin. Microbiol. 40 (11), 4363-4366 (11 2002)
- Identification of I50L as the Signature Atazanavir (ATV)Resistance
Mutation in Treatment-Naive HIV-1Infected Patients Receiving ATV-Containing
Regimens
Colonno,R., Rose,R., McLaren,C., Thiry,A., Parkin,N., Friborg,J.
J.
Infect. Dis. 189 (10), 1802-1810 (2004)
- Selection of high-level resistance to human immunodeficiency
virus type 1 protease inhibitors
Watkins,T., Resch,W., Irlbeck,D., Swanstrom,R.
Antimicrob.
Agents Chemother. 47 (2), 759-769 (2 2003)
- Neandertals Likely Kept Their Genes to Themselves
PLoS
Biology: Vol. 2, No. 3, e80 DOI: 10.1371/journal.pbio.0020080
- No Evidence of Neandertal mtDNA Contribution to Early
Modern Humans
David Serre, André Langaney, Mario Chech, Maria Teschler-Nicola,
Maja Paunovic, Philippe Mennecier, Michael Hofreiter, Göran Possnert
and Svante Pääbo
PLoS
Biology: Vol. 2, No. 3, e57 DOI: 10.1371/journal.pbio.0020057
- Balancing selection at the prion protein gene consistent
with prehistoric kurulike epidemics.
Mead S, Stumpf MP, Whitfield J, Beck JA, Poulter M, Campbell
T, Uphill JB, Goldstein D, Alpers M, Fisher EM, Collinge J.
Science. 2003 Apr 25;300(5619):640-3. Epub 2003 Apr 10.
*Note - this requires a subscription to Science
- The Amount of DNA Polymorphism Maintained in a Finite
Population When the Neutral Mutation Rate Varies Among Sites
Tajima F.
Genetics.
1996 Jul;143(3):1457-65.
- Genetic Polymorphism and Natural Selection in the
Malaria Parasite Plasmodium falciparum
Escalante AA, Lal AA, Ayala FJ.
Genetics.
1998 May;149(1):189-202.
- Statistical method for testing the neutral mutation
hypothesis by DNA polymorphism
Tajima F.
Genetics.
1989 Nov;123(3):585-95.
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- Structure-assisted design of mechanism-based irreversible
inhibitors of human rhinovirus 3C protease with potent antiviral activity
against multiple rhinovirus serotypes.
Matthews DA, Dragovich PS, Webber SE, Fuhrman SA, Patick AK, Zalman LS, Hendrickson TF, Love RA, Prins TJ, Marakovits JT, Zhou R, Tikhe J, Ford CE, Meador JW, Ferre RA, Brown EL, Binford SL, Brothers MA, DeLisle DM, Worland ST.
Proc Natl Acad Sci U S A. 1999 Sep 28;96(20):11000-7
- The crystal structures of severe acute respiratory syndrome
virus main protease and its complex with an inhibitor.
Yang H, Yang M, Ding Y, Liu Y, Lou Z, Zhou Z, Sun L, Mo L, Ye S, Pang H, Gao GF, Anand K, Bartlam M, Hilgenfeld R, Rao Z.
Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13190-5.
- Coronavirus main proteinase (3CLpro) structure: basis for
design of anti-SARS drugs.
Anand K, Ziebuhr J, Wadhwani P, Mesters JR, Hilgenfeld R.
Science. 2003 Jun 13;300(5626):1763-7.
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