Geospiza employees are shown in bold type

Development of a software program to dynamically create repetitive element databases for RepeatMasker. 

Arian Smit 1, Robert Hubley1, Todd M. Smith2. 
1. Institute for Systems Biology,
2. Geospiza, Inc. Seattle WA.

2005 Plant and Animal Genomics Conference

rPhrap - A Modern Phrap Assembler

Christie Robertson1, Gary Montry2, and Todd M. Smith1
1. Geospiza, Inc., 2442 NW Market St., Seattle, WA 98107 USA
2. Southwest Parallel Software, Albuquerque, NM

GSAC 2004 DNA Sequencing and Analysis Conference

Adding Data to the Assembly Process

Christie Robertson1 , Mon-Chaio Lo1 , Gary Montry2 , Sandra Porter1, Todd Smith1
1. Geospiza, Inc., 2442 NW Market St. #344, Seattle, WA, 98107, USA
2. Southwest Parallel Software, Albuquerque, NM, USA

2004 Plant and Animal Genomics Conference

LINEA, A New Assembly System

Mon-Chaio Lo1 , Gary Montry2 , Christie Robertson1 , Todd Smith1
1. Geospiza, Inc., 2442 NW Market St. #344, Seattle, WA, 98107, USA
2. Southwest Parallel Software, Albuquerque, NM, USA

2004 Plant and Animal Genomics Conference

A Common SNP in the Factor VIII (f-VIII) Gene Encodes a Conservative Aspartate to Glutamate Substitution (Asp1241Glu) in the B-Domain that Influences f-VIII Activity Levels

Deepa K. Machiah¹, Kevin Viel¹, Laura Almasy², Jose Manuel Soria³, Sandra Porter⁴, Juan Carlos Souto³, John Blangero³, Jordy Fontcuberta³, Tom Howard¹
1. Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA,
2. Genetics, Southwest Foundation for Biomedical Research, San Antonio, TX
3. Unitat dHemostsia i Trombosi, Departament dHematologia, Hospital de la Santa Creu i Sant Pau, Barcelona, Spain;
4. Geospiza, Inc., Seattle, WA

published in Blood, Volume 102, issue 11, November 16, 2003

The G20210A Mutation Is a Common Thrombosis Risk Factor That Modulates Prothrombin mRNA Stability Independent of the Cleavage and Polyadenylation Process

Tom Howard¹, Xiaoping Meng¹, Manana Khachidze¹, Sandra Porter², Jeff Wilusz³, T.J. Murphy⁴
1. Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA
2. Geospiza, Inc., Seattle, WA
3. Microbiology and Molecular Genetics, UMDNJ - New Jersey Medical School, Newark, NJ
4. Pharmacology, Emory University School of Medicine, Atlanta, GA, USA

published in Blood, Volume 102, issue 11, November 16, 2003

Teaching Undergraduate Biology with Bioinformatics

Sandra Porter¹, Linnea Fletcher², Stephanie Tatem Murphy³, Rebecca Pearlman⁴, Jeannette Staheli¹, and Elaine Johnson⁵
1. Geospiza, Inc., Seattle, WA
2. Austin Community College, Austin, TX
3. University of California, Davis, Davis, CA
4. Johns Hopkins University, Baltimore, MD
5. City College of San Francisco, San Francisco, CA

2003 Digital Biology: The Emerging Paradigm

Assembly Improvements Using Sequence Metadata

Christie Robertson¹, Gary Montry², Mon-Chaio Lo¹, Joe Slagel, and Todd M. Smith¹
1. Geospiza, Inc., Seattle, WA 98107 USA
2. Southwest Parallel Software, Albuquerque, NM

2003 Genome Sequencing and Analysis Conference

Second Generation DNA Alignment Tools

Christie Robertson¹, Eric Flynn¹, Gary Montry², Sandra Porter¹, and Todd M. Smith¹
1. Geospiza, Inc., Seattle, WA
2. Southwest Parallel Software, Albuquerque, NM

Recomb 2003 DNA Sequencing Technologies and Computation

Detection of Alternative Splicing with Phrap

Sandra Porter, Mark Dilger, Christie Robertson, Todd M. Smith, and Joe Slagel

2003 Plant and Animal Genomics Conference

Analysis of DNA Library and Sequence Quality with the Finch®-Server

Todd M. Smith, Joe Slagel, Dave Campbell, Sandra Porter

2002 ABRF Conference

From SNP to Structure: A Tour Through the World of Bioinformatics

Sandra Porter¹ and Linnea Fletcher ²
1. Geospiza, Inc., Seattle, WA
2. Austin Community College, Austin, TX

2002 O'Reilly Bioinformatics Technology Conference

SNP Discovery With the Finch^®-Server

Todd Smith and Sandra Porter. Geospiza, Inc.

2001 Genome Sequencing and Analysis Conference

Information Management Systems for Molecular Biology

Todd M. Smith, Dave Campbell, Roberta Connelly, Andrew Leonard,
Sandra G. Porter, and Joe Slagel
Geospiza, Inc. Seattle, WA

2001 Association of Biomolecular Resource Facilities Conference

Automated DNA sequence data management and analysis with the
Finch™-Chromatogram Server
Todd M. Smith, Joe Slagel, Chris Abajian, Dave Campbell
Geospiza, Inc., Seattle, WA 98103

1999 Association of Biomolecular Resource Facilities Conference